Virology – Additional Reading

For Virology

• Chapter 1: Introduction
  • IFITM3 restricts the morbidity and mortality associated with influenza
• Chapter 2: General properties
  • A comprehensive and quantitative exploration of thousands of viral genomes
  • Unbiased strain-typing of arbovirus directly from mosquitoes using nanopore sequencing
  • Uncovering Earth’s virome
  • Simplifying virus classification: The Baltimore system
• Chapter 3: Viral replication/genetics
  • Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza A infection
• Chapter 4: Pathogenesis
  • Diverse viruses require the calcium transporter SPCA1 for maturation and spread
  • Fetal neuropathology in Zika virus-infected pregnant female rhesus monkeys
• Chapter 5: Immunology
  • IFN-lambda prevents influenza virus spread from the upper airways to the lungs and limits virus transmission
  • MxB is an interferon-induced restriction factor for human herpesviruses
  • A role for Fc function in therapeutic monoclonal antibody-mediated protection against Ebola virus
• Chapter 6: Epidemiology
  • Transmission cycles, host range, evolution, and emergence of arboviral disease
  • Viral surveillance and discovery
  • Virus discovery: one step beyond
• Chapter 7: Picornaviruses
  • Bacteria facilitate enteric virus (poliovirus) co-infection of mammalian cells
  • Picornavirus RNA is protected from cleavage by ribonuclease during virion uncoating and transfer across cellular and model membranes
• Chapter 8: Astroviruses
  • Non-human primates harbor diverse mammalian and avian astroviruses
• Chapter 9: Calicivirus
  • Vesicle-cloaked virus clusters are optimal units for inter-organismal viral transmission
• Chapter 10: Hep E
  • Pig model mimicking chronic hepatitis E virus infection in immunocompromised patients
• Chapter 11: Togaviruses
  • Mxra8 is a receptor for multiple arthritogenic alphaviruses
  • Neutralizing antibodies inhibit Chikungunya virus budding at the plasma membrane
• Chapter 12: Flaviviruses
  • Single-cell transcriptional dynamics of flavivirus infection
  • Flavivirus internalization is regulated by a size-dependent endocytic pathway
  • Inhibition of Japanese encephalitis virus infection by the host zinc-finger antiviral protein
  • Flavivirus antagonism of type I IFN signaling reveals prolidase as a regulator of IFNAR1 surface expression
  • Flaviviruses exploit the lipid droplet protein AUP1 to trigger lipophagy and drive virus production (Flavivirus paper – topic introductions)
• Chapter 13: Coronaviruses
  • Development of animal models against emerging coronaviruses
  • Pigs lacking the scavenger receptor cysteine-rich domain 5 of CD163 are resistant to PRRSV1 infection (e00415-18.full)
• Chapter  14: Orthomyxomaviruses
  • Nuclear TRIM25 specifically targets influenza virus ribonucleoproteins
  • Extreme heterogeneity of influenza virus infection in single cells
  • Direct visualization of the conformational dynamics of single influenza hemagglutinin trimers
• Chapter 15: Arenaviruses (Joe DeRisi – Snake Inclusion Body video)
  • NRP2 and CD63 are host factors for Lujo virus cell entry
  • DDX3 suppresses type 1 IFNs and favors viral replication during Arenavirus infection
• Chapter 16: Bunyaviruses
  • Consequences of Reconfiguring the Ambisense S Genome Segment of Rift Valley Fever Virus
• Chapter 17: Paramyxoviruses
  • Inclusion bodies of HPIV3 inhibit antiviral stress granules by shielding viral RNAs
  • Viral regulation of host cell biology by the hijacking of the nucleolar DNA-damage response
• Chapter 18: Filoviruses
  • ERGIC-53 is required for the production of infectious arenavirus, coronavirus and filovirus particles
  • Systematic analysis of mAbs against Ebola virus GP defines features that contribute to protection
• Chapter 19: Rabies
  • mGluR2 is a cellular receptor for rabies virus
• Chapter 20: Reoviruses
  • Effect of antibiotic-mediated microbiome modulation on rotavirus vaccine immunogenicity
• Chapter 21: Polyomaviruses
  • Characterization of BK Polyomaviruses from Kidney Transplant Recipients Suggests a Role for APOBEC3
• Chapter 22: Papillomaviruses
  • Identification of virus-encoded microRNAs in divergent Papillomaviruses
  • Large-scale RNAi reveals the requirement of nuclear envelope breakdown for nuclear import of human papillomaviruses
• Chapter 23: Herpesviruses
  • HSV-1 VP22 Inhibits AIM-2-Dependent Inflammasome Activation
  • EBV activates FBXO2 to limit viral infectivity by targeting gB for degradation
  • HSHV-induced ligand-mediated activation of PDGFRalpha drives Kaposi’s sarcomagenesis
  • A genome-wide screen of EBV proteins that modulate host SUMOylation
• Chapter 24: Smallpox
  • Bioluminescent imaging of vaccinia virus infection in rats as a model for human smallpox
  • Identification of host DEAD-box RNA helicases that regulate cellular tropism of oncolytic Myxoma virus in human cancer cells
• Chapter 25: Adenoviruses
  • Vaccine vectors based on Adenovirus 19a/46 exhibit broad tissue tropism
• Chapter 26: Parvoviruses
  • Phosphorylated STAT5 directly facilitates parvovirus B19 DNA replication in human erythroid progenitors through interaction with the MCM complex
• Chapter 27: Retroviruses
  • Single HIV-1 imaging reveals steps of docking at the nuclear pore, uncoating, and nuclear transport
  • Receptor usage dictates HIV-1 restriction by human TRIM5alpha in DC subsets
• Chapter 28: Hepadnaviruses
  • Deciphering the origin of hepatitis B viruses by means of a family of non-enveloped fish viruses
• Bacteriophages:
  • Bacteriophage cooperation suppresses CRISPR-Cas3 and Cas9 immunity
• Archaeal viruses:
  • The enigmatic archaeal virosphere
• Plant viruses
  • The effects of plant virus infection on polarization reflection from leaves
  • A mutation in the melon Vacuolar Protein Sorting 41 prevents systemic infection of Cucumber mosaic virus
  • BaYMV VPg is the determinant protein for breaking eIF4E-mediated recessive resistance in barley plants
• Giant viruses:
  • Diversity and evolution of the emerging Pandoraviridae family
  • Giant viruses with an expanded complement of translational system components